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Usage of anti-NPM1 antibodies for diagnostics and research of acute myeloid leukemia: a systematic review

Published onFeb 26, 2023
Usage of anti-NPM1 antibodies for diagnostics and research of acute myeloid leukemia: a systematic review


Nucleophosmin (NPM1) is essential for the maintenance of a healthy cellular state. It is the most common mutation found in acute myeloid leukaemia (AML). This review systematically analyzes the current usage and potential of anti-NPM1 antibodies in diagnostics and research around AML. Inclusion and exclusion criteria were applied to an initial pool of 142 papers, which produced a total of 5 studies that were examined in detail. Anti-NPM1 antibodies have only successfully been used for diagnostic purposes within studies backed by standard means of detection, such as polymerase chain reaction (PCR). With further validation and increased specificity, however, anti-NPM1 antibodies have the potential to be an option for diagnostics and research. In a clinical context, anti-NPM1 antibodies may be used for rapid diagnostics at first diagnosis by integration into already existing immunophenotyping processes. Additionally, especially monoclonal antibodies with high sensitivity may be used for the diagnosis of minimal residual disease (MRD). In research, anti-NPM1 antibodies could be used as part of single-cell approaches to unveil the leukemic lineage and identify the cells of origin (leukemic stem cells) of AML. Studies such as that will be essential to the development of more personalized medicines against AML.

1 Introduction

1.1 NPM1 – Structure & Function

The NPM1 gene is located in chromosome 5q35 and constitutes of twelve exons. In its physiological form is a nucleo-cytoplasmic shuttle protein, which is mainly located in the nucleus [1]. It plays an important role in several cellular processes, such as the biogenesis of ribosomes [2][3][4], the maintenance of genomic stability [5][6], the organization of nucleosomes[7], and the duplication of centrosomes [8]. Additionally, different publications show that NPM1 interacts with different tumor suppressors, such as Adenosine diphosphate-Ribosylation Factor (ARF) [9] and tumor protein p53 [10][11][12]. The subcellular localization of the protein is essential for its physiological function. The protein has different domains that ensure the right concentration of protein in different cell compartments by establishing a balance between import and export processes. However, mutations occurring in NPM1 lead to a permanent translocation of NPM1 into the cytoplasm, which is suggested to be a key driving force of leukemic pathogenesis [13].

1.2 NPM1 mutations

All of the approximately 50 known NPM1 mutations are found in exon 12. Out of the mutations described type A is the most common one accounting for 75 – 80% of all NPM1 mutations [14]. Types A, B, C, and D are caused by the insertion of four base pairs causing the loss of two tryptophan moieties at positions 288 and 290. In types E and F there is an insertion of nine base pairs, leading to the loss of the tryptophan moiety at position 290 [15]. Both tryptophan moieties are essential parts of the nucleolar localization sequence [16]. Additionally, a leucine-rich [17] nuclear export signal is created by the mutation, so that the protein is found in the cytoplasm at an unusually high rate [16]. Further mutations causing aberrant cytoplasmic localization have recently been found in exons 5, 9, and 11 [18]. This shift to the cytoplasm disturbs the protein’s function as a shuttle protein, thereby disrupting its physiological functions, which is supposed to be a key factor in leukaemogenesis.

1.3 NPM1 and AML

Acute myeloid leukemia (AML) is a clonal neoplastic disorder that arises from malignant transformation of haematopoietic stem and progenitor cells. This leads to a maturation arrest and aberrant proliferation of myeloid progenitor cells resulting in the accumulation of AML blast cells in the bone marrow. One of the most prevalent driver mutations of AML is a frameshift mutation in the NPM1 gene, which is present in approximately 30% of AML patients [19]. Analysis of NPM1 mutated cells revealed a multilineage involvement of myeloid, monocytic, megakaryocytic, and erythroid cells [20]. This suggests either that the pool of NPM1 mutated cells is fueled by a common myeloid progenitor or that the NPM1 mutation constitutes a growth advantage in proliferation of myeloid cells unlike in lymphoid cells [21].

Over the last 40 years, the treatment of AML has largely been based on chemotherapy involving cytotoxic drugs like cytarabine and daunorubicin, as well as stem cell transplantation [22]. However, despite these intensive and toxic therapies, the majority of patients dies, with modest increases in 5-year overall survival in under 60-year-olds from 10% in the 1970s to around 40 – 45% in the 2000s, with complete remission occurring in 75 – 80% of patients following initial treatment [23][24], highlighting the need for more effective and selective drugs. In particular, for NPM1-mutated AML, there is a clear lack of development of more specific targeted therapies. This could be attributed to the fact that the precise mechanism of how NPM1 mutations drive AML pathogenesis and which cells lead to relapse remains largely unknown.

Although NPM1 mutated AML is generally chemotherapy-sensitive, still a high fraction of patients relapses, especially if they harbor co-mutations such as in FLT3 [25]. It is therefore of clinical and prognostic relevance if and which cells carry a mutated NPM1 gene. In order to improve patient outcomes, it is essential to find out which cells cause AML in the first place and which cells evade current therapy regimes to specifically target them.

1.4 Objective of this review

The goal of this review is to systematically review current knowledge and methods regarding diagnostics and research using anti-NPM1 antibodies. The core topics being covered are the different types of antibodies currently in use. This publication distinguishes polyclonal and monoclonal antibodies, specific to either just the mutated or wild type and mutated protein. Limitations will be discussed and potential new uses in diagnostics and research will be explored.

2 Methods

2.1 Literature search baseline characteristics

A thorough literature search involving AML and NPM1 was conducted at the beginning of the project. The literature review was performed between 15th of December 2021 and 18th of December 2021. All studies relevant to the topic up to the 18th of December 2021 went through the selection process. The search terms “NPM1”, “AML” and “antibody” constituted the baseline of the research. Later the search was expanded with the terms “flow cytometry” and “immunohistochemistry”. These preliminary searches resulted in 142 results.

2.2 Inclusion and exclusion criteria

The following criteria were applied for the review:

  1. Only English and German publications were recognised.

  2. A protocol for the use of the antibody is available.

  3. The antibody is anti-human.

  4. No reviews were included.

  5. The antibody was used for flow cytometry and / or immunohistochemistry.

  6. The full publication is available.

After these criteria were met, the publications’ reliability and completeness were determined individually. Upon closer inspection, six further publications were excluded due to incomplete or non-comprehensive protocols and clear conflict of interest.

3 Results

Initially, 142 results were found. Of these papers, 102 were related to flow cytometry, 30 were related to immunohistochemistry, and 10 to both. After application of inclusion and exclusion criteria, 11 potential studies were identified, which were then further examined. In summary, the literature search yielded 5 publications.

The Flowchart shows the process of the PubMed literature search employed in this publication. From the initial 142 hits using various search queries such as AML, NPM1, flow cytometry, and antibodies, 131 papers were excluded based on the inclusion and exclusion criteria mentioned in the text. The remaining 11 publications were individually examined regarding relevance and completeness. After this examination, another six publications were excluded. Five publications were deemed complete and relevant and included in the study. This process is visualized in a Prisma flow diagram, where the different steps are visualized as textboxes interconnected by arrows.

Figure 1: Flowchart of the selection of publications for this systematic review using the inclusion and exclusion criteria.

3.2 Methods of detection

NPM1 mutations are routinely detected by polymerase chain reaction (PCR). Further common means of detection are high-resolution fragment analysis, melting curve analysis, and denaturing high-performance liquid chromatography [26]. Additionally, NPM1 mutations with aberrant cytoplasmic localization coupled with fluorescent proteins were detected by immunohistochemistry [27]. While PCR shows a higher sensitivity for mutant detection compared to applications using NPM1-specific antibodies the use of NPM1-specific antibodies allows spatial resolution and keeps cells intact so that further parameters may be examined [28].

The NPM1 protein and / or its mutant form may be specifically labeled using antibodies. These antibodies are either conjugated with a fluorochrome themselves, or a secondary conjugated antibody will be added to them. The fluorochromes are then excited by a laser with a certain wavelength. They will then emit light with a known wavelength itself which is then detected. This way, cells labeled by the antibody can be distinguished from other cells. Overall, the use of NPM1-specific antibodies in flow cytometry and immunohistochemistry can be divided into four possibilities: Polyclonal, as well as monoclonal, antibodies have been used by different groups. Of these antibodies, some were NPM1-mutant specific, while others targeted the wild type as well as the mutated protein.

3.3 Monoclonal anti-NPM1 antibodies

Oelschlegel et al. have devised a protocol for the flow cytometric detection of NPM1 with aberrant cytoplasmic localization. They were testing five monoclonal antibodies, which detected both the wild type and mutant form of the protein. The clone 5E3 antibody, directed at the C-terminus of NPM1, achieved the highest difference in mean fluorescence intensity (MFI) and was therefore chosen for all further experiments. Eleven out of 298 samples were discrepant from the PCR results (6 false positive and 5 false negative) [29].

Furthermore, two groups have independently developed monoclonal antibodies specific to NPM1 mutants only, the results however, were inconsistent between the publications. Gruszka et al. produced an antibody (T26) specific to the mutated C-terminus of the most common mutations, consisting of 10 out of the at the time known 21 mutations, which made up 95% of all NPM1 mutations. It produced specific results in immunohistochemistry and flow cytometry applications, with a minimum percentage of blasts necessary for the mutation to be detected of 0,001% [30]. Tan et al. reported that although monoclonal antibodies were produced and used in immunohistochemistry, they did cross-react with the wild type form of NPM1 [27].

3.4 Polyclonal anti-NPM1 antibodies

In 2015 Du Pisani and Shires were using a rabbit polyclonal antibody from Abcam, UK, which specifically binds to the mutated C-terminus of NPM1. A secondary conjugated goat anti-rabbit antibody was used for the detection of the bound primary antibody. NPM1-mutated and non-mutated cell lines, as well as patient samples, were reliably distinguished if they contained more than 10% NPM1-mutated cells. For the distinction between mutated and wild type NPM1, the normalized MFI (mean fluorescence intensity compared to the wild type negative control). An important economical finding of this study was the fact that the flow cytometric assay was ten times cheaper than a standard cytogenetic panel [31].

Recently in 2020, El-Gamal et al. were using a polyclonal antibody from NOVUS Biologicals since the antibody manufactured by Abcam is not commercially available anymore. In the published paper, NPM1-mutant and non-mutant AML were distinguished using two individual statistical methods: Samples were analyzed using the normalized mean fluorescence intensity and the percentage of cells expressing the NPM1 mutant. In both cases, cut-off values were established to distinguish the mutant from the wild type protein. The obtained results were compared to PCR. Both means of analysis produced discordant results in four out of 89 cases (percentage NPM1 mutant positive cells: 1 false negative, 3 false positive; normalized MFI: 4 false positive). The group proposed a cross-reaction of the antibody between wild type and mutant NPM1 as a reason for the false positive results [32].

4 Discussion

4.1 Advantages and limitations of anti-NPM1 antibodies in diagnostics

NPM1 antibodies may in the future be used for a flow cytometric NPM1 mutational screening. AML blasts undergo immunophenotyping at first diagnosis. The protocols followed by the studies introduced in this review can easily be integrated into this process with just a few extra steps. No further training or specialized equipment and personnel is required. NPM1 mutational status may also be examined using the introduced antibodies in immunohistochemistry, which would however be more time-consuming. The monoclonal antibody raised by Gruszka et al. [30] and the polyclonal antibody manufactured by Abcam [27] may be used at first diagnosis due to their high sensitivity. Du Pisani and Shires [31] and El Gamal et al. [32] did unfortunately not specify the minimum percentage of cells with NPM1 mutation needed for the mutation to be detected and therefore, further validation would be necessary.

Anti-NPM1 antibodies may also be used in follow-up examinations and the determination of minimal residual disease (MRD). The minimum percentage of mutated cells for the mutation to be detected using the assays introduced ranges over a wide range (0,001% to 10%). The commonly used MRD detection method in the case of AML with NPM1 mutation is real-time quantitative PCR. It detects the disease if 0,1 to 0,001% of the cells are mutated [33]. The antibody introduced by Gruszka et al. [30] may therefore be used in an MRD flow cytometric assay due to its high sensitivity, which lies within the range of sensitivity for commonly used MRD detection methods. The Abcam antibody used in the flow cytometric assay of Du Pisani and Shires [31] should not be used since at least 10% of all cells analysed had to carry the NPM1 mutation in order for detection to occur. This is far above the mutant cell percentage present at MRD. Additionally, it is not yet clear whether cross-reaction occurs. The antibodies used by Tan et al. [27] as well as Oelschlegel et al. [29] should not be used either because they react with the wild type or mutated protein. The NOVUS Biologicals antibody used by El-Gamal et al. [32] needs further validation since the minimum percentage of cells with NPM1 mutation needed for the mutation to be detected was not disclosed.

An important economic outcome of the studies examined is that the cost of a flow cytometric assay was reported to be ten times cheaper than a standard cytogenetic panel, thus providing a huge saving potential if performed on the large scale [31].

4.2 Advantages and limitations of anti-NPM1 antibodies in research

Although knowledge about the role that NPM1 plays in the development of AML has recently been expanding, leading to more accurate prognosis and despite an increase in treatment options, the origin of the mutation amongst the cell lineage itself remains unknown. In order to continue to improve patient outcomes by personalizing therapy options to the individual AML entity, it is essential to find the leukemic stem cells that cause AML at first diagnosis and relapse. Anti-NPM1 antibodies could be the key tool in unveiling the leukemic lineage for AML populations. They could be used to specifically mark leukemic cells, which could then be sorted using fluorescence-activated cell sorting (FACS). This enables scientists to target and analyze the leukemic cells specifically rather than all cells provided in a patient sample. Concentrated NPM1 mutated cell populations could then be further using single-cell techniques as Triana et al. [34] have used at different time points such as first diagnosis, with MRD, and at relapse. For this purpose, very high sensitivities must be achieved. MFI and percentage of positive cells are irrelevant since each cell is analyzed individually rather than on a population level. New analysis protocols are therefore necessary. Cut-off values for each subpopulation of cells (e. g. blasts, leukemic stem cells, lymphocytes, macrophages, etc.) would have to be established to determine which cells are NPM1-mutated and which populations represent wild type populations.

5 Summary & conclusion

Anti-NPM1 antibodies have successfully been used in immunohistochemistry and flow cytometry to distinguish NPM1-mutant from NPM1-wild type AML. The reliability of the results of flow cytometric and immunohistochemistry analysis ranges from 100% concordant results in smaller study populations to approximately 95% in larger study populations compared to the current gold standard PCR. However, the findings suggest that the mutant-specific monoclonal and polyclonal antibodies may cross-react with the mutant and wild type NPM1. This is highlighted by T26 [30]. This antibody provided the most promising results of all the antibodies introduced in this paper, yet it has not made the leap from the lab to being commercially available in more than ten years. The mutant-specific antibody manufactured by Abcam used by Du Pisani and Shires [31] is not commercially available anymore. Considering all data included in this review it is safe to say, anti-NPM1 antibodies should only be used in diagnostics, such as AML rapid diagnostics, within clinical trials backed by conventional reliable methods of detection such as PCR, since patient lives are directly affected by the results of these analyses. After optimization of staining protocols, however, anti-NPM1 antibodies may be the key for new advancements, especially in single-cell approaches, to unveil the cell lineage of AML. The distinction between NPM1-mutated and NPM1 wild type cells within the bone marrow and blood of each individual patient and the comparison of these cellular populations at different time points (first diagnosis, MRD, and relapse) allows further classification of cells on an individual patient basis. This may pave the way for personalized medicines to target the disease and cells remaining after conventional therapy more specifically.

Conflict of Interest

The author declares no conflict of interest.

Data availability

No raw data was generated for this manuscript.

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